Understanding and mitigating errors and biases in metabarcoding: an introduction for non-specialists
M.D. Preston, M. Fritzsche, P. Woodcock
2022 DEFRA JNCC
JNCC 699 ISSN 0963-8091
An Action Plan for making progress with using DNA to monitor terrestrial invertebrates 2021
P. Woodcock, J. Cottrell, D. Heaver, N. Barsoum, D. Leatherland, R. Askew, A. Briscoe, A. Burian, A. Cole, D. Cooke, J. Day, K. Deiner, D. Genney, M. Gurney, M. Harris, H. Hipperson, E. Jones, M. Lawniczak, C. Macadam, C. McSorley, K. Miller, S. Mynott, A. Nisbet., K. Peck,
M.D. Preston, B. Price, D. Read, H. Rees, A. Robinson, A. Stringer, D. Yu
2021 DEFRA DNA Centre of Excellence
JNCC 691 ISSN 0963-8091
ETS factors are required but not sufficient for specific patterns of enhancer activity in different endothelial subtypes
A. Neal, S. Nornes, P. Louphrasitthipol, N. Sacilotto,
M.D. Preston, L. Fleisinger, S. Payne, S. De Val
2021 Developmental Biology
10.1016/j.ydbio.2021.01.002
The Use of Next-Generation Sequencing for the Quality Control of Live-Attenuated Polio Vaccines
B. Charlton, J. Hockley, M. Laassri, T. Wilton, L. Crawt,
M.D. Preston, NGS Study Group, P. Rigsby, K. Chumakov, J. Martin
2020 Journal of Infectious Diseases
10.1093/infdis/jiaa299
Vaccination of macaques with DNA followed by adenoviral vectors encoding simian immunodeficiency virus (SIV) Gag alone delays infection by repeated mucosal challenge with SIV
N. Almond, N. Berry, R. Stebbings,
M.D. Preston, C. Ham, M. Page, D. Ferguson, N. Rose, B. Li, E.T. Mee, M. Hassall, C. Stahl-Hennig, T. Athanasopoulos, T. Papagatsias, S. Herath, A. Benlahrech, G. Dickson, A. Meiser, S. Patterson
2019 Journal of Virology
10.1128/JVI.00606-19
Report on the WHO collaborative study to investigate the utility of next generation sequencing (NGS) as a molecular test of virus stocks used in the manufacture of Poliovirus vaccine (Oral)
J. Martin, K. Chumakov, J. Hockley, T. Wilton, L. Crawt, M. Majumdar, E. Mee, B. Valdazo-Gonzalez, NGS Study Group,
M. D. Preston, P. Rigsby, B. Charlton
2019 WHO Expert Committee
Report
Clostridium difficile clade 3 (RT023) have a modified cell surface and contain a large transposable island with novel cargo
H.A. Shaw, L. Khodadoost,
M.D. Preston, J. Corver, P. Mullany, B.W. Wren
2019 Nature Scientific Reports
10.1038/s41598-019-51628-5
The recent emergence of a highly related virulent Clostridium difficile clade with unique characteristics
H.A. Shaw,
M.D. Preston, K.E.W. Vendrik, M.D. Cairns, H.P. Browne, R.A. Stabler, M.J.T. Crobach, J. Corver, H. Pituch, A. Ingebretsen, M. Pirmohamed, A. Faulds-Pain, E. Valiente, T.D. Lawley, N.F. Fairweather, E.J. Kuijper, B.W. Wren
2019 Clinical Microbiology and Infection
10.1016/j.cmi.2019.09.004
Para-cresol production by Clostridium difficile affects microbial diversity and membrane integrity of Gram-negative bacteria
I.J. Passmore, M.P.M. Letertre,
M.D. Preston, I. Bianconi, M.A. Harrison, F. Nasher, H. Kaur, H.A. Hong, S.D. Baines, S.M. Cutting, J.R. Swann, B.W. Wren, L.F. Dawson
2018 PLoS Pathogens
10.1371/journal.ppat.1007191
Pathways-wide genetic risks in Chlamydial infections overlap between tissue tropisms: A genome-wide association scan
C.h. Roberts, S. Ouberg,
M.D. Preston, H.J.C. de Vries, M.J. Holland, S.A. Morre
2018 Mediators of Inflammation
10.1155/2018/3434101
Frequent Undetected Ward-Based Methicillin-Resistant Staphylococcus aureus Transmission Linked to Patient Sharing Between Hospitals
O. Tosas Auguet, R.A. Stabler, J. Betley
M.D. Preston, M. Dhaliwal, M. Gaunt, A. Ioannou, N. Desai, T. Karadag, R. Batra, J.A. Otter, H. Marbach, T.G. Clark, J.D. Edgeworth
2018 Clinical Infectious Diseases
10.1093/cid/cix901
Comparative genome analysis and global phylogeny of the toxin variant Clostridium difficile PCR ribotype 017 reveals the evolution of two independent sublineages
M.D. Cairns,
M.D. Preston, C.L. Hall, D.N. Gerding, P.M. Hawkey, H. Kato, H. Kim, E.J. Kuijper, T.D. Lawley, H. Pituch, S. Reid, B. Kullin, T.V. Riley, K. Solomon, P.J. Tsai, J.S. Weese, R.A. Stabler, B.W. Wren
2017 J. Clinical Microbiology
10.1128/JCM.01296-16
The nature of the conserved basic amino acid sequences found among 437 heparin binding proteins determined by network analysis
T.R. Rudd,
M.D. Preston, E.A. Yates
2017 Molecular BioSystems
10.1039/C6MB00857G
From FASTQ to Function: In Silico Methods for Processing Next-Generation Sequencing Data
M.D. Preston, R.A. Stabler
2016 Clostridium difficile: Methods and Protocols
10.1007/978-1-4939-6361-4_3
Development of a candidate reference material for adventitious virus detection in vaccine and biologicals manufacturing by deep sequencing
E.T. Mee,
M.D. Preston, P.D. Minor, S. Schepelmann, CSS Participants
2016 Vaccine
10.1016/j.vaccine.2015.12.020
Conjunctival fibrosis and the innate barriers to Chlamydia trachomatis intracellular infection: a genome wide association study
C.h. Roberts, C. S. Franklin, P. Makalo, H. Joof, I. Sarr, O.S. Mahdi, A. Sillah, M. Bah, F. Payne, A.E. Jeffreys, W. Bottomley, A. Natividad, S. Molina-Gonzalez, S.E. Burr,
M.D. Preston, D. Kwiatkowski, K.A. Rockett, T.G. Clark, M.J. Burton, D.C.W. Mabey, R. Bailey, I.S. Barros, M.J. Holland
2015 Nature Scientific Reports
10.1038/srep17447
Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi
S.A. Assefa, C. Lim,
M.D. Preston, C.W. Duffy, M.B. Nair, S.A. Adroub, K.A. Kadir, J.M. Goldberg, D.E. Neafsey, P. Divis, T.G. Clark, M.T. Duraisingh, D.J. Conway, A. Pain, B. Singh
2015 Proceedings of the National Academy of Sciences
10.1073/pnas.1509534112
Impact of individual movement and changing resource availability on male-female encounter rates in an herbivorous insect
M.D. Preston, M.L. Forister, J.W. Pitchford, P.A. Armsworth
2015 Ecological Complexity
10.1016/j.ecocom.2015.07.004
Genomic epidemiology of a protracted hospital outbreak caused by a toxin A negative, Clostridium difficile sublineage PCR Ribotype 017 strain in London, England.
M.D. Cairns,
M.D. Preston, T.D. Lawley, T.G. Clark, R.A. Stabler, B.W. Wren
2015 J. Clinical Microbiology
10.1128/JCM.00648-15
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
F. Coll, R. McNerney,
M.D. Preston, J.A. Guerra-Assuncaol, A. Warry, G. Hill-Cawthrone, K. Mallard, M. Nair, A. Miranda, A. Alves, J. Perdigao, M. Voveoros, I. Portugal, Z. Hasan, R. Hasan, J.R. Glynn, N. Martin, A. Pain, T.G. Clark
2015 Genome Medicine
10.1186/s13073-015-0164-0
Imputation-based population genetics analysis of Plasmodium falciparum malaria parasites
H. Samad, F. Coll,
M.D. Preston, H. Ocholla, R.M. Fairhurst, T.G. Clark
2015 PLoS Genetic
10.1371/journal.pgen.1005131
On a singular initial-value problem for the Navier-Stokes equations
L.E. Fraenkel,
M.D. Preston
2015 Mathematika
10.1112/S0025579314000333
Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates
H. Ocholla,
M.D. Preston, M. Mipando, A.T. Jensen, S. Campino, B. MacInnis, D. Alcock, A. Terlouw, I. Zongo, J-B. Oudraogo, A. Djimda, S.A. Assefa, O. Doumbo, S. Borrmann, A. Nzila, K. Marsh, R.M. Fairhurst, F. Nosten, T.J. Anderson, D.P. Kwiatkowski, A. Craig, T.G. Clark, J. Montgomery
2014 J. Infectious Diseases
10.1093/infdis/jiu349
A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains
M.D. Preston, S. Campino, S.A. Assefa, D. Echeverry, H. Ocholla, A. Amambua-Ngwa, L.B. Stewart, D.J. Conway, S. Borrmann, P. Michon, I. Zongo, J-B. Ouedraogo, A. Djimda, O. Doumbo, F. Nosten, A. Pain, T. Bousema, C.J. Drakeley, R.M. Fairhurst, C.J. Sutherland, C. Roper T.G. Clark
2014 Nature Communications
10.1038/ncomms5052
SVAMP: Sequence variation analysis, maps and phylogeny
R. Naeem, L. Hidayah,
M.D. Preston, T.G. Clark, A. Pain
2014 Bioinformatics
10.1093/bioinformatics/btu176
PolyTB: A genomic variation map for Mycobacterium tuberculosis
F. Coll,
M.D. Preston, J.A. Guerra-Assuncao, G. Hill-Cawthorn, D. Harris, J. Perdigao, M. Viveiros, I. Portugal, F. Drobniewski, S. Gagneux, J.R. Glynn, A. Pain, J. Parkhill, R. McNerney, N. Martin, T.G. Clark
2014 Tuberculosis
10.1016/j.tube.2014.02.005
PlasmoView: A web-based resourse to visualise global Plasmodium falciparum genomic variation
M.D. Preston, S.A. Assefa, H. Ocholla, C.J Sutherland, S. Borrmann, A. Nzila, P. Michon, TT Hien, T Bousema, C.J. Drakeley, I. Zongo, J.B. Ouedraogo, A.A. Djimde, O.K. Doumbo, F. Nosten, R.M. Fairhurst, D.J. Conway, C. Roper, T.G. Clark
2013 J. Infectious Diseases
10.1093/infdis/jit812
Using family-based designs for detecting rare variant disease associations
M.D. Preston, F. Dudbridge
2013 Annals of Human Genetics
10.1111/ahg.12051
EstMoi: Estimating multiplicity of infection using parasite deep sequencing data
S.A. Assefa,
M.D. Preston, S. Campino, H. Ocholla, C.J. Sutherland, T.G. Clark
2013 Bioinformatics
10.1093/bioinformatics/btu005
Elucidating Emergence and Transmission of Multidrug-Resistant Tuberculosis in Treatment Experienced Patients by Whole Genome Sequencing
T.G. Clark, K. Mallard, F. Coll,
M.D. Preston, S.A. Assefa, D. Harris, S. Ogwang, F. Mumbowa, B. Kirenga, D.M. O'Sullivan, A. Okwera, K.D. Eisenach, M. Joloba, S.D. Bentley, J.J. Ellner, J. Parkhill, E.C. Jones-Lopez, R. McNerney
2013 Plos One
10.1371/journal.pone.0083012
Dystromirs as serum biomarkers for monitoring the disease severity in Duchenne Muscular Dystrophy
I.T. Zaharieva, M. Calissano, M. Scoto,
M.D. Preston, S. Cirak, L. Feng, J. Collins, R. Kole, M. Guglieri, V. Straub, K. Bushby, A. Ferlini, J.E. Morgan, F. Muntoni
2013 Plos One
10.1371/journal.pone.0080263
SpolPred: Rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences
F. Coll, K. Mallard,
M.D. Preston, S. Bentley, J. Parkhill, R. McNerney, N. Martin, T.G. Clark
2012 Bioinformatics
10.1093/bioinformatics/bts544
VarB: A variation browsing tool for polymorphisms derived from next-generation sequence data
M.D. Preston, H.M. Manske
et al.
2012 Bioinformatics
10.1093/bioinformatics/bts557
A Nyström method for a boundary value problem arising in unsteady water wave problems
M.D. Preston, S.N. Chandler-Wilde, P.G. Chamberlain
2011 IMA: J. Numerical Analysis
10.1093/imanum/drq009
Evolutionary optimality in stochastic search problems
M.D. Preston, J.W. Pitchford, A.J. Wood
2010 J. Royal Society Interface
10.1098/rsif.2010.0090
An integral equation method for a boundary value problem arising in unsteady water wave problems
M.D. Preston, S.N. Chandler-Wilde, P.G. Chamberlain
2008 J. Integral Equations and Applications
10.1216/JIE-2008-20-1-121
Conferences
Poster: Butterfly mating, Won 3rd Prize in Poster Competition.
M.D. Preston, J.W. Pitchford, P.R. Armsworth, M. Forrister
2012 UCL Computational Life and Medical Sciences Network Annual Symposium, London
-
Paper: An integral equation method for a boundary value problem arising in unsteady water wave problems
M.D. Preston, S.N. Chandler-Wilde, P.G. Chamberlain
2005 Proc. of the UKBIM5, Liverpool